Agent Skills

arbor

Graph-native code intelligence that replaces embedding-based RAG with deterministic program understanding.

README.md

Arbor

Code context for people and agents.
Find a function’s callers. Trace the path through your code.
Know what breaks before you break it.

Rust CI Crates.io Latest release GHCR Glama MCP Directory MIT License

Side-by-side: an agent navigating tokio with grep-and-read (47 tool calls, still searching) vs the same agent with arbor's code graph (4 graph calls + 1 read, done)

Simulated replay — the arbor commands and their output are real (tokio @ 178k LOC). Methodology: BENCHMARKS.md

v3.0.3 · Rust calls through module paths, macros and self are now edges. arbor diff --base origin/main reports a branch the way its pull request shows it, and a new function no longer inherits the blast radius of the file it lands in. Same-named symbols in different languages stay apart, and a graph built on another branch is refreshed instead of answered from. New: arbor receipt, a plain-English account of what each agent turn changed. Release notes


Why Arbor

Most AI coding tools treat code as text. Arbor builds a semantic dependency graph — functions, classes, and modules as nodes; calls, imports, and inheritance as edges — then answers execution-aware questions with deterministic precision:

Question Arbor answer
If I change this symbol, what breaks? Blast radius with depth, confidence, and risk level
Who calls this — directly and transitively? Caller/callee traversal on the call graph
What's the shortest path between A and B? A* path through real dependencies
Is this PR too risky to merge? CI gate on blast-radius thresholds

No keyword guessing. No embedding hallucinations. One graph, every interface.

Where the graph is unsure, it says so — edges carry a confidence, and ambiguous resolutions are labelled rather than hidden. An honest unknown beats a confident wrong answer.


What's new in v3.0.3

A fix release. Every item below was a wrong answer, not a missing feature, and each ships with a regression test.

Fix What was wrong
Rust calls resolve crate::jobs::enqueue(), Type::new(), self.helper() and calls inside assert!/format! produced no edge, so heavily used Rust functions reported no callers. Paths now resolve through the module tree, and macro arguments are read as code.
Per-symbol arbor diff Every symbol in a touched file counted as changed, so adding a function to a busy file reported that file's whole blast radius. New symbols now carry none; only modified ones do. Tests that call the change are listed as worth running, not counted as impact.
--base and --staged arbor diff, check and summary saw only uncommitted edits unless ARBOR_DIFF_BASE was set. --base origin/main compares against the merge base, which is what a pull request shows; --staged checks just what is staged.
Languages stay apart A TypeScript enqueue could be reported as a caller of a Rust enqueue. Resolution stays within a language family, and callers/callees list each same-named definition separately.
No stale graphs After a branch switch, answers came from the old branch's graph when no remaining file was newer than it. The graph now records the commit it was built from and refreshes when HEAD moves.
Inheritance edges class Middle(Base) produced no edge, so changing a base class showed zero blast radius. extends/implements edges are emitted and inherited methods stay reachable.
Call cycles rank as one A closed ring of functions filled the top of every centrality ranking. Cycles are condensed before PageRank.
HTTP bridge hardening arbor bridge --http accepted cross-origin and DNS-rebinding requests. It now checks Origin/Host and requires JSON bodies.
Quieter bridge The bridge re-indexed ignored build directories in a busy loop.

Also new: arbor receipt. After each coding-agent turn it explains, in plain English, what changed and what was touched that you didn't ask for, with arbor receipt undo to put a turn back.

Cached graphs from 3.0.0 are rebuilt automatically on first use.

v3.0.0 — The Right Node (symbol resolution consults the importing file)

One fix, measured.

Symbol resolution consults the importing file. When a bare name matched definitions in several modules, resolve_ref fell through to SameDir and attached the edge to whichever definition sat in the caller's own directory — not a dropped edge, a confidently misrouted one, stamped at 0.55 confidence.

GraphBuilder already kept a per-file import map, but only apply_import_validation read it, and that scores an edge after one has been chosen. It never saw the references going to the wrong node. Consulting it between the same-file and same-directory checks keeps a local definition shadowing an import, while letting a written import beat mere adjacency. Resolution::ViaImport scores 0.93, above SameDir's 0.55.

Measured

A fixture of 260 modules across 10 layers, each layer defining the same 26 function names. Ground truth is derived from the generator's own edge list, so the expected answer is exact rather than estimated.

True downstream v2.6.0 v3.0.0
179 0 163
178 0 161
161 0 133
143 22 133
122 22 119
36 22 61
16 22 46

Previously flat at about 22 regardless of the real answer. Now it tracks. Risk on the largest hub moves from LOW to CRITICAL.

Total edge count barely moves (1335 → 1334). That is the signature of misrouting rather than loss: the edges were always there, pointing at the wrong nodes.

Breaking

  • Resolution gains a ViaImport variant — an exhaustive match will not compile
  • Edges land on different nodes, so cached graphs, stored node ids, and centrality baselines from 2.6.0 will differ

Call cycles are condensed before PageRank. Each strongly connected component is ranked once and that mass is shared across its members, so a closed ring does not fill the top of the ranking and a cycle that calls out keeps its members together. The number CentralityScores reports is still the v2.6.0 percentile, i / (n - 1).

Known and still open

Written down rather than left to be discovered:

  • Small targets now over-report (36 → 61, 16 → 46). Safer direction than silence, but not yet correct.
  • Dynamic and reflective imports (importlib, __import__, import(), eval(require(...))) are unresolvable by construction and are documented as expected misses in the fixture rather than counted as defects.
v2.6.0 — Ground Truth (colliding symbols kept, deterministic resolution, edge confidence, percentile centrality)

Correctness, not speed. Each of these was silently wrong before.

Fix Why it mattered
Colliding symbols are kept SymbolTable used HashMap::insert, so a second handler, new, or process replaced the first. The loser had zero callers and was invisible to blast radius.
Resolution is deterministic Same-directory locality was decided by iterating a HashMap. Rust seeds RandomState per process, so the same binary on the same input could build different edges between runs. Now asserted across eight fresh processes.
Edges carry confidence A proven same-file call and a same-directory guess were identical evidence. Each edge now scores [0,1] by how it resolved.
Exported TS symbols indexed once export_statement recursed into its children, then the generic loop recursed again — every exported symbol became two vertices sharing one node id. 133 phantom nodes on a 149-file app, 25% of the graph.
Method calls on untyped receivers resolve obj.method() was dropped outright, leaving the graph nearly edgeless on TS/JS — and an empty graph reports a blast radius of zero, which reads as "safe" rather than "unknown".
Centrality is a percentile rank Scores were divided by the graph maximum, so the top node was 1.0 by construction and a 0.6 threshold meant nothing consistent between repos. Adding one hub rescaled every other node.
Resolution is O(1), not O(refs × nodes × files) Unresolvable references — stdlib and third-party calls, most call sites in real code — paid the worst case. Suffixes are now indexed.

New capability — concept search. Substring matching cannot find get_authenticated from login; they share no substring. Identifiers are now tokenized and expanded through curated concept clusters, and docstrings, signatures, and paths are indexed alongside names. Deterministic, offline, no model. Available on the library as ArborGraph::search_ranked (arbor query remains literal-substring for now).

New capability — hunk-level impact. changed_node_ids_for_ranges keeps only symbols whose lines actually changed, instead of every symbol in a touched file.

Measured on identical node sets, after the duplicate-extraction fix:

Codebase Before After
TypeScript (149 files) 172 edges 196 (+14%)
Rust (arbor-graph) 116 edges 167 (+44%)

Graph caches from earlier versions are invalidated — centrality now means something different, so a stale cache would be read wrong.

v2.5.0 — The Last Excuse (PageRank 23x, parallel indexing, warm-start centrality)
Change Measured
PageRank rewrite — flat call-graph adjacency replaces per-iteration traversal 149.8ms → 6.6ms on a 10k-node graph (23x), verified side-by-side vs the old implementation
Parallel indexing — parse fans out across all cores, deterministic assembly Arbor: 253ms → 95ms · tokio (178k LOC): 2.7s → 1.6s
Warm-start centrality — watcher recomputes seed from previous scores Converges in ~2 rounds after a one-file patch instead of the full 20-iteration budget
Convergence early-exit Iteration stops at 1e-9 max delta — the budget is a ceiling, not a sentence

Think a number is wrong? cargo bench -p arbor-graph and prove it: BENCHMARKS.md.

v2.4.0 — The Agent-Native Leap (MCP 2026-07-28, HTTP transport, Tasks, MCP Apps)
Feature What it does
MCP 2026-07-28 Stateless server/discover, response caching (ttlMs/cacheScope), dual-version fallback for 2025-03-26 clients
Tasks extension tasks/get · tasks/update · tasks/cancel — cold-start indexing returns task handles, not errors
MCP Apps Interactive blast-radius graph (ui://arbor/blast-radius) and architecture map (ui://arbor/architecture-map) inside agent hosts
HTTP transport arbor bridge --http --port 3333 — stateless MCP behind load balancers
Real get_blast_radius Git-diff-aware impact analysis via shared arbor-graph::compute_blast_radius
Pagination offset / limit / hasMore on search_symbols and get_map
Benchmarks Criterion suite + CI regression gate — see BENCHMARKS.md

Quickstart

# Install (crates.io can lag the latest release: see docs/INSTALL.md)
cargo install arbor-graph-cli

# Index your project (one command)
cd your-project && arbor setup

# Explore before you edit
arbor map . --exclude-test          # ranked project skeleton (~1k tokens)
arbor refactor parse_file           # blast radius of changing a symbol
arbor diff                          # impact of uncommitted git changes
arbor diff --base origin/main       # impact of this branch, as its PR shows it

# Wire up your AI agent
claude mcp add --transport stdio --scope project arbor -- arbor bridge

After every turn: arbor hook claude makes Claude Code show a receipt of what it changed, what it touched that you didn't ask for, and what to test. Receipts →

Agent workflow: call get_map first → search_symbols / get_file_graph to locate code → Read only the target file. Full MCP guide →


For AI agents (MCP)

Arbor ships a production MCP server via arbor bridge. Stdio is the default; HTTP is opt-in for remote/enterprise.

# Stdio (Claude, Cursor, VS Code)
arbor bridge

# HTTP (MCP 2026-07-28)
arbor bridge --http --port 3333

Cursor / VS Code

{
  "mcpServers": {
    "arbor": {
      "type": "stdio",
      "command": "arbor",
      "args": ["bridge"]
    }
  }
}

Templates: templates/mcp/ · Setup scripts: scripts/setup-mcp.sh · scripts/setup-mcp.ps1

16 MCP tools

Tier Tools Use when
Orientation get_map First call — token-budgeted project skeleton ranked by PageRank
Surgical list_entry_points · get_callers · get_callees · search_symbols · get_file_graph · get_node_detail Navigate to a specific symbol or file
Broad get_logic_path · analyze_impact · find_path · get_knowledge_path Trace dependencies, blast radius, paths
Agent-native get_blast_radius · explain_symbol · audit_security · get_architecture_overview · batch_query PR impact, onboarding, security audit, bulk lookup

Every tool returns { ok, tool, data, meta: { suggested_next_tool, suggested_next_args } } so agents chain calls without re-prompting.

Registry: io.github.Anandb71/arbor · Official API lookup · Glama listing


CLI reference

Command Description
arbor setup One-shot init + index
arbor map Ranked, token-budgeted project skeleton
arbor query <term> Fuzzy symbol search (supports | OR)
arbor callers / callees <sym> One-hop graph traversal. Same-named symbols are listed per definition; narrow with jobs::enqueue, Type.method or src/jobs.rs:enqueue
arbor entry-points HTTP handlers, main, jobs, webhooks
arbor file-graph <path> Symbols + edges in one file
arbor inspect <sym> Full symbol detail
arbor path <a> <b> Shortest call-graph path
arbor refactor <sym> Blast radius before refactoring
arbor diff Git-change impact report, per symbol: new symbols carry no blast radius. --base <ref> compares against the merge base (what a PR shows), --staged only staged changes
arbor check CI safety gate (--max-blast-radius N, --base <ref>)
arbor summary Auto-generate PR description (--base <ref>)
arbor agent review Autonomous PR architecture review
arbor agent onboard Codebase onboarding guide
arbor agent guard Real-time architectural safety gate
arbor bridge MCP server (add --http for HTTP transport)
arbor watch Live re-index on file changes
arbor receipt list / show / undo Plain-English receipts of what each agent turn changed, and undo for a turn (guide)
arbor hook claude Wire Arbor into Claude Code: directives, receipts after every turn
arbor gui Native desktop UI

All query commands support --json. map additionally supports --tokens N, --focus "pattern", --focus-changed.


Visual tour

Arbor visualizer screenshot


Installation

# macOS / Linux: prebuilt binary from the latest GitHub release
curl -fsSL https://raw.githubusercontent.com/Anandb71/arbor/main/scripts/install.sh | bash

# Windows (PowerShell)
irm https://raw.githubusercontent.com/Anandb71/arbor/main/scripts/install.ps1 | iex

# Scoop (Windows)
scoop install https://raw.githubusercontent.com/Anandb71/arbor/main/packaging/scoop/arbor.json

# Rust / Cargo (crates.io can lag the latest release)
cargo install arbor-graph-cli

# npm wrapper (cross-platform)
npx @anandb71/arbor-cli

# Docker
docker pull ghcr.io/anandb71/arbor:latest

Pinned installs: docs/INSTALL.md


Language support

Production parsers: Rust · TypeScript / JavaScript · Python · Go · Java · C / C++ · C# · Dart

Fallback parsers: Kotlin · Swift · Ruby · PHP · Shell

Adding languages →


CI & pull requests

arbor diff --markdown
arbor check --max-blast-radius 30 --markdown
arbor summary

GitHub Action (pre-built binary, ~5s vs ~3–5min compile):

name: Arbor Check
on: [pull_request]

jobs:
  arbor:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

      - uses: Anandb71/arbor@v3.0.3
        with:
          command: check . --max-blast-radius 30 --markdown
          comment-on-pr: true
          github-token: ${{ secrets.GITHUB_TOKEN }}

Architecture

arbor-core (Tree-sitter parsing)
    └── arbor-graph (petgraph + PageRank + impact analysis)
            ├── arbor-cli      — CLI + MCP bridge
            ├── arbor-mcp      — MCP protocol server
            ├── arbor-server   — WebSocket JSON-RPC
            ├── arbor-watcher  — incremental file watcher
            └── arbor-gui      — desktop UI

Docs: Quickstart · Architecture · Graph schema · MCP integration · Receipts · Benchmarks · Roadmap · Philosophy

Release channels: GitHub Releases · crates.io · GHCR · npm · VS Code / Open VSX · Scoop — Releasing guide


Philosophy

  1. Consumer first — beautiful, intuitive, instantly useful
  2. Accessibility second — works across ecosystems, runs anywhere
  3. Affordability next — minimal overhead, from laptops to monoliths

Arbor is local-first: no mandatory data exfiltration, offline-capable, open source. Security policy →


Contributing

cargo build --workspace
cargo test --workspace
cargo clippy --workspace --all-targets --all-features

CONTRIBUTING.md · Good first issues · Code of conduct


Contributors

Anandb71 holg cabinlab Karthiksenthilkumar1 zacwolfe sanjayy-j sathguru07 Junaid

7 contributors | View all


License

MIT — see LICENSE.

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